About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10533005_10534967_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10533005 - 10534967
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCTGAGGGA
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGACAAT
U12 Branch Point Sequence:
CTTCCCCAGACA
Flanking Amino Acid:
GTFPAGKPAHAYPWDKSSLK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.3
47
38.2
Major BPS
46.5
-0.2
1.3
50.9
41
Major PPT
84.3
0.77
0.8
77
37.2
Minor 5ss
12.7
-4.3
3.7
17.4
31.7
Minor BPS
48.1
-0.1
2
64.81
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005689
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005885
10532902 - 10542331
9430