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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10535432_10536047_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10535432 - 10536047
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CTCCTTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGGAT
U12 Branch Point Sequence:
TCTGGATGAACT
Flanking Amino Acid:
VIWMWICHHIEYDVVGFHDK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
58.9
0.22
1.5
59.3
47.1
Major PPT
77.5
0.62
0.7
72.5
25.7
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
46.8
-0.1
2.2
69.74
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005689
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005885
10532902 - 10542331
9430