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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10536166_10539821_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10536166 - 10539821
Intron Length:
3656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCCTGCTGCACC
Flanking Amino Acid:
GYAALFQQMCSIAGIQCMKL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
45.5
-0.3
2.3
58.45
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005689
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005885
10532902 - 10542331
9430