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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10540008_10540475_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10540008 - 10540475
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGAAA
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCCTTTTATC
Flanking Amino Acid:
NVDTSDKFTFRYNEFYFLTH
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.2
38.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
29.5
-2.3
3.4
38.5
46.8
Minor BPS
64.8
0.45
1.6
75.87
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005689
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005885
10532902 - 10542331
9430