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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10540667_10541426_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10540667 - 10541426
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCCT
5'SS Class:
major
3'SS Sequence:
ACATATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTTTCTTACAT
Flanking Amino Acid:
VHPDTAIIQTVNGTATISVD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
68.2
42.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67.4
0.39
0.9
61.3
39
Minor 5ss
40.6
-1.1
3.1
58
46.1
Minor BPS
63.1
0.49
1.8
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005689
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005885
10532902 - 10542331
9430