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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10552112_10552517_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10552112 - 10552517
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAAAC
5'SS Class:
major
3'SS Sequence:
TCTGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTTCTGAGCT
Flanking Amino Acid:
RAERKAVEHRVILVQLETLR
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.4
36.7
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
79.3
0.66
0.8
77
31.7
Minor 5ss
32.7
-2
3
35.1
41.3
Minor BPS
68.4
0.66
1.7
88.74
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005488
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005696
10548080 - 10565741
17662