Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10554718_10555342_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10554718 - 10555342

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTGAC

5'SS Class:

major

3'SS Sequence:

ATTTGGCATCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AGTATTCTAATC

Flanking Amino Acid:

LQSEVTHLENSLVSSNARCV

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

66.7

39.6

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

65.4

0.35

56.1

44.3

Minor 5ss

37.1

-1.5

3.4

51.5

45.7

Minor BPS

48.7

-0.1

1.6

58.48

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005488

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005696

10548080 - 10565741

17662