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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10559386_10560250_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10559386 - 10560250
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
ACCGCTCTAAGC
Flanking Amino Acid:
EMRRLTRKLEEFRQKSLDWE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
76.7
0.6
0.9
69.4
36.8
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
43.5
-0.5
2
48.29
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005488
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005696
10548080 - 10565741
17662