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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10560377_10562637_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10560377 - 10562637
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGAACTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGAACT
Flanking Amino Acid:
EQQLKKFQEELARLRRSYEK
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.3
0.46
1
62.7
39.3
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
76.3
0.9
1.6
94.51
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005488
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005696
10548080 - 10565741
17662