Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10567478_10570022_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10567478 - 10570022

Intron Length:

2545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGAG

5'SS Class:

major

3'SS Sequence:

TGTTTGTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGCAT

U12 Branch Point Sequence:

TGCATTGTACCT

Flanking Amino Acid:

LPYEDVAIPLNELPEPEQDN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

41.1

Major BPS

67.2

0.43

1.4

77.7

37.1

Major PPT

82.5

0.73

0.9

80.5

Minor 5ss

30.8

-2.2

3.4

35.9

42.5

Minor BPS

42.9

-0.4

2.2

60.02

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005486

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005659

10567379 - 10570148

2770