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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10572789_10576867_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10572789 - 10576867
Intron Length:
4079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TGGTGCTAACCT
Flanking Amino Acid:
FIYLSYGVKTDPGETCPAFT
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
73.3
0.52
1
69.3
41.7
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
46.4
-0.1
2.3
68.02
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005256
10572737 - 10583794
11058