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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10578045_10578136_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10578045 - 10578136
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAG
U12 Branch Point Sequence:
ATTGAGGTGACA
Flanking Amino Acid:
MFDGKLGRITGLDPAGPLYR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
52.3
0.06
1.5
52.7
43.2
Major PPT
86.4
0.82
0.8
81.5
30.6
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
39.3
-0.8
2.7
57.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005256
10572737 - 10583794
11058