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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10578239_10578687_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10578239 - 10578687
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GATTTAATATTC
Flanking Amino Acid:
FVDVIHSDTDGLGYADTLGH
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.1
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.3
0.86
0.8
88.2
29.1
Minor 5ss
37.1
-1.5
3.4
50.6
46.1
Minor BPS
43.2
-0.5
1.9
54.28
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005256
10572737 - 10583794
11058