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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10578778_10579704_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10578778 - 10579704
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
CTGTATGATTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GGACCCGTAATG
Flanking Amino Acid:
QPGCPLTIFSGMQYFKCDHQ
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
79.7
35.3
Major BPS
67.7
0.44
1
58
38.9
Major PPT
57.5
0.17
1.2
60.6
44
Minor 5ss
43.1
-0.8
2.7
56.7
42
Minor BPS
47.5
-0.3
2.1
51.56
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005256
10572737 - 10583794
11058