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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10580891_10581845_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10580891 - 10581845
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TCTCGCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
GGCAGTCTAACT
Flanking Amino Acid:
FDTADKEPFCIYHYFVDIVT
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
75.4
0.57
0.8
68.9
31.5
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
44.1
-0.3
2
58.79
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005256
10572737 - 10583794
11058