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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10584191_10584277_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10584191 - 10584277
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
TCTACCCCATGC
Flanking Amino Acid:
SARLSAGSARRPLRFPSDLE
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
75.5
0.57
0.8
66.5
35.6
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
39.7
-0.8
2.2
52.01
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005037
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005192
10584093 - 10585835
1743