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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10590714_10591384_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10590714 - 10591384
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TGTTGCTTACAT
Flanking Amino Acid:
KLCADEHSCENPAQFGESDC
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
66.4
0.41
1
61.3
37
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
54.1
0.21
2.2
77.97
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515