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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10591683_10593550_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10591683 - 10593550
Intron Length:
1868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
AGAAGCTGAACT
Flanking Amino Acid:
DSEVEFPRRQRPHRCISSCQ
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
72.3
37.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
82.2
0.72
0.9
76.2
37.8
Minor 5ss
31.5
-2.1
3.5
47.6
47.9
Minor BPS
48.9
-0
1.9
66.39
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515