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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10596996_10598153_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10596996 - 10598153
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
GGAGCCATGATT
Flanking Amino Acid:
ELIRRRREELRHALDIREHY
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
48.3
-0
1.7
62.41
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515