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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10598264_10599190_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10598264 - 10599190
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
ATTGCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCCTTTGTAAAT
Flanking Amino Acid:
TPQETYFKSQAEWREEVKKH
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.8
0.47
0.9
62.8
39
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
48.6
-0
2.1
67.62
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515