About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10599300_10600811_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10599300 - 10600811
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATGGTGGACA
Flanking Amino Acid:
DGFKILMKQTWQSKPRNRPS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
61.7
42.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.7
0.78
0.9
76.9
42.1
Minor 5ss
32.4
-2
3
37.9
40.5
Minor BPS
42
-0.6
2.5
55.43
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515