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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10600971_10604007_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10600971 - 10604007
Intron Length:
3037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTTTCTTTATCA
Flanking Amino Acid:
NEPVSEKVDIWSFGVVLWEL
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82.2
0.72
0.9
81.9
34.5
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
71.8
0.68
1.5
79.99
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515