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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10604167_10604929_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10604167 - 10604929
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGATGCTGATTT
Flanking Amino Acid:
KIIHRDLKSPNVLVTHTDAV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
91.1
0.92
0.6
84.6
30.3
Minor 5ss
35
-1.7
3.1
44.9
36.9
Minor BPS
44.9
-0.3
2
61.07
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515