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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10605122_10605611_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10605122 - 10605611
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCCTTTAACA
Flanking Amino Acid:
KLKHPNIIAFKGVCTQAPCY
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.5
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84
0.76
0.8
80.8
29.7
Minor 5ss
42.2
-0.9
3.2
57.5
41.6
Minor BPS
84.5
1.08
1
88.93
27

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004746
10590612 - 10613126
22515