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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10667370_10674880_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10667370 - 10674880
Intron Length:
7511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
TCATTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTCTCATTCATT
Flanking Amino Acid:
RLRNPPVNALSLTVLQALED
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.4
42.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
80.8
0.69
0.9
78.1
34.8
Minor 5ss
35.1
-1.7
3.5
47.6
48
Minor BPS
52
0.14
2.1
72.41
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025599
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019926
10667296 - 10676912
9617