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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10674985_10676862_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10674985 - 10676862
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
GACTTCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACTTCACT
Flanking Amino Acid:
ICGENGKFSAGTDGFTRSHH
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
67.5
0.39
0.9
63.7
37.7
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
61.1
0.43
2.1
84.76
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025599
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019926
10667296 - 10676912
9617