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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10697383_10713809_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10697383 - 10713809
Intron Length:
16427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
GCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AAGTCTTTACAT
Flanking Amino Acid:
HWCCHLGWCHCKYVYQPMTP
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
61.7
38.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.8
0.49
0.8
65.3
30.5
Minor 5ss
29.5
-2.3
3.2
40.9
45.3
Minor BPS
54.2
0.21
1.7
68.61
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023510
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033248
10697211 - 10714366
17156