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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10729971_10731399_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10729971 - 10731399
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
TTGTCTTCCACA
Flanking Amino Acid:
GMLDTFNYEQTLLETTTNLL
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
71.2
0.48
0.9
65.3
35.3
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
54.8
0.14
2
71.13
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412