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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10739847_10741263_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10739847 - 10741263
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCAATTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGCATTCAATT
Flanking Amino Acid:
SHNLNQQQQEALWFPLLEAM
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73
0.52
0.9
70.6
39.5
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
51
0.11
1.7
70.6
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412