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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10743471_10748309_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10743471 - 10748309
Intron Length:
4839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATTT
Flanking Amino Acid:
FQFLRSLLDPREGINQDLIH
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
57
0.3
1.5
73.36
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412