Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10755338_10756685_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10755338 - 10756685

Intron Length:

1348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CATCCTTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

CTCACTCTAACT

Flanking Amino Acid:

LFVNRTLFDQVLEFLCSPDD

Intron Amino Acid Position:

837

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

69.4

0.44

0.9

63.9

36.5

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

56.5

0.28

1.8

72.98

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003634

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003823

10718251 - 10794662

76412