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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1075546_1086881_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1075546 - 1086881
Intron Length:
11336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAGA
5'SS Class:
major
3'SS Sequence:
TACCCCGCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTCTTACCC
Flanking Amino Acid:
LTLIWKNPHKLWGAAAARRV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64.3
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.9
0.31
0.9
54
36.2
Minor 5ss
44.5
-0.6
2.7
58.4
45.8
Minor BPS
70.5
0.62
1.6
78.69
36.8

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398