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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10760242_10761720_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10760242 - 10761720
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
EDLVPLVKNQVFEFLIRLHS
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.7
79.2
27.9
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412