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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10763125_10763175_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10763125 - 10763175
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCTGGGAAG
5'SS Class:
weak_major
3'SS Sequence:
TATGAGTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTGCCCTTTATG
Flanking Amino Acid:
LFKVIAPPLNLWCSKHLCCC
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.4
53.8
43.7
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
60.5
0.24
1.1
51
47.5
Minor 5ss
18.7
-3.6
3.8
27
36.7
Minor BPS
59.7
0.16
1.7
64.88
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412