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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10765748_10766090_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10765748 - 10766090
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
KIQVMEQHFQDVVPVIVDYC
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412