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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10767142_10768280_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10767142 - 10768280
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TCTCCCTTCATT
Flanking Amino Acid:
FYEGKAKAVVGLSGDTSKRK
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
80.6
0.69
0.8
73.5
36.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
65.9
0.58
1.8
81.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412