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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10772022_10773234_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10772022 - 10773234
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GTTGCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGTTGCTGAAAC
Flanking Amino Acid:
HLHYDLINFTWINSRTAVLL
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
81
0.7
0.9
77.2
37
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
53.9
0.1
2
69.75
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412