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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10773316_10774747_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10773316 - 10774747
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTTGTCTGACTT
Flanking Amino Acid:
CRGDVVHFLLVKRDDTGAIH
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.4
46
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
41.6
-0.9
3.1
53.5
44.6
Minor BPS
48.4
-0
1.8
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412