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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10774856_10775679_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10774856 - 10775679
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCTGCCTTAAAT
Flanking Amino Acid:
KVWMTFPYGRMDPSSVPLLA
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
76.1
34.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
33.9
-1.8
2.9
43.1
43.9
Minor BPS
73.7
0.82
1.5
85.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412