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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10776012_10776283_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10776012 - 10776283
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
CCAGTCTCATTT
Flanking Amino Acid:
SGGSVFELSFKRVMGVRTCE
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
42.8
-0.4
1.8
51.65
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412