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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10777465_10778935_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10777465 - 10778935
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCC
5'SS Class:
strong_major
3'SS Sequence:
AATCTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTATGCTGAGAA
Flanking Amino Acid:
RLLCGFAKGQITMWDLASGK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
71.7
38.4
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
74
0.54
1
66.3
39.8
Minor 5ss
35.6
-1.6
2.8
46
42
Minor BPS
46.1
-0.3
2.1
62.85
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412