Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10779061_10786295_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10779061 - 10786295

Intron Length:

7235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTGCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AACTTATTAATT

Flanking Amino Acid:

GTSHGLALIFDQNQALRLCL

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

26.1

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

0.54

0.9

65.9

40.9

Minor 5ss

39.7

-1.2

2.8

45.9

43.7

Minor BPS

60.5

0.41

1.6

72.26

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003634

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003823

10718251 - 10794662

76412