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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10788824_10790123_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10788824 - 10790123
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACAG
5'SS Class:
major
3'SS Sequence:
CTTGTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTGTATTTGATT
Flanking Amino Acid:
SDSGDRTHLKRKKKLPDSLS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.6
45.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.1
0.7
0.8
80.5
31.5
Minor 5ss
35.8
-1.6
3.3
47.5
47.9
Minor BPS
57.3
0.31
1.5
71.03
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003634
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003823
10718251 - 10794662
76412