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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10795931_10796792_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10795931 - 10796792
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATGCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTATAC
Flanking Amino Acid:
MLCLKGLIVVDAFQAWCG
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
0.9
69.6
36.6
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
67.3
0.52
1.7
79.24
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003629
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003701
10792474 - 10796817
4344