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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10806207_10806612_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10806207 - 10806612
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TTTCTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTCTATATTT
Flanking Amino Acid:
DILQKIKYYMSHSNAKLQLA
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
53.1
43.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
79.4
0.66
0.8
78.8
33.8
Minor 5ss
34.8
-1.7
3.5
43.1
46.4
Minor BPS
61.5
0.44
1.8
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023171
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018930
10804755 - 10814418
9664