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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10810488_10810993_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10810488 - 10810993
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AAAAGCAAAATT
Flanking Amino Acid:
LRVNGIWALMNMAFQAEQKI
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
83.4
0.75
0.8
80.8
31.2
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
40
-0.6
2.1
54.28
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023171
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018930
10804755 - 10814418
9664