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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10811087_10813192_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10811087 - 10813192
Intron Length:
2106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTAAAATT
Flanking Amino Acid:
LLLEFSPSKEPILESGAIEL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.8
74.5
35
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
49.5
0.04
1.9
72.64
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023171
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018930
10804755 - 10814418
9664