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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10814023_10814353_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10814023 - 10814353
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAACA
Flanking Amino Acid:
SSIKVRLAAVRCLHSLSRSV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
63.4
0.42
1.8
80.54
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023171
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018930
10804755 - 10814418
9664