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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10816305_10818784_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10816305 - 10818784
Intron Length:
2480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTGTTTAAAT
Flanking Amino Acid:
SVSAITDIKRLDHDLKHAHE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
72.8
0.51
1
70.7
39.1
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
69.5
0.69
1.8
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003230
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003338
10815744 - 10864208
48465