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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10818986_10820920_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10818986 - 10820920
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTAAACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
RTDDSCIVLKTLPCLVRMCS
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.7
0.62
0.9
73.9
41
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003230
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003338
10815744 - 10864208
48465